Ancient DNA reveals the deadly diseases behind Napoleon’s defeat

Investigating the Mystery of the 1812 Retreat

Napoleon’s invasion of Russia in 1812, known as the “Patriotic War of 1812,” ended in one of history’s most disastrous retreats. To better understand what role disease may have played in this collapse, researchers from the Institut Pasteur’s Microbial Paleogenomics Unit partnered with the Laboratory of Biocultural Anthropology at Aix Marseille University. The team analyzed the DNA of 13 French soldiers exhumed in 2002 from a burial site in Vilnius, Lithuania, uncovered during archaeological excavations led by the Aix-Marseille University group. Using next-generation sequencing technology on ancient DNA, they searched for genetic traces of infectious organisms.

The researchers detected two distinct disease agents: Salmonella enterica subsp. enterica (serovar Paratyphi C), which causes paratyphoid fever, and Borrelia recurrentis, the bacterium responsible for relapsing fever. The latter is transmitted by lice and produces alternating periods of fever and recovery. Although different, both infections can cause severe fever, exhaustion, and digestive distress. Their combined impact could have intensified the soldiers’ suffering at a time when cold, hunger, and poor sanitation were already taking a heavy toll.

Genetic Evidence From Napoleonic Soldiers

Out of the 13 soldiers examined, DNA from S. enterica Paratyphi C was found in four individuals, and B. recurrentis was detected in two. This marks the first direct genetic confirmation that these pathogens were present in Napoleon’s army. Their exact contribution to the enormous death toll remains uncertain, but the findings complement earlier research that identified Rickettsia prowazekii (the cause of typhus) and Bartonella quintana (responsible for trench fever), both long suspected of spreading through the ranks during the retreat.

Because only a small number of samples could be analyzed compared to the thousands of remains in Vilnius, researchers cannot yet determine how widespread these infections were. The tested soldiers represent a tiny fraction — 13 out of more than 3,000 bodies at the site and roughly 500,000 to 600,000 troops who took part in the campaign, of whom about 300,000 died during the retreat.

Understanding the Past to Protect the Future

“Accessing the genomic data of the pathogens that circulated in historical populations helps us to understand how infectious diseases evolved, spread and disappeared over time, and to identify the social or environmental contexts that played a part in these developments. This information provides us with valuable insights to better understand and tackle infectious diseases today,” explains Nicolás Rascovan, Head of the Microbial Paleogenomics Unit at the Institut Pasteur and last author of the study.

To achieve these results, the team worked in collaboration with scientists from the University of Tartu in Estonia to develop an innovative authentication workflow involving several steps, including a phylogeny-driven interpretive approach for the highly degraded genome fragments recovered. This method enables scientists to accurately identify pathogens even if their DNA only yields low coverage, in some cases even indicating a specific lineage.

“In most ancient human remains, pathogen DNA is extremely fragmented and only present in very low quantities, which makes it very difficult to obtain whole genomes. So we need methods capable of unambiguously identifying infectious agents from these weak signals, and sometimes even pinpointing lineages, to explore the pathogenic diversity of the past,” he adds.

Linking History and Disease

The team’s results closely match the historical descriptions of the fevers that swept through Napoleon’s forces. This connection strengthens the theory that infectious diseases contributed to the disastrous outcome of the 1812 campaign, along with other factors such as exhaustion, starvation, and the brutal Russian winter.

Napoleon’s 1812 campaign ultimately ended in defeat, forcing a massive withdrawal that devastated his army. The Russian forces reclaimed Moscow, marking a turning point that dealt a fatal blow to Napoleon’s military ambitions.